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Puma


Overview

Perl is installed on the operating system of each node and is currently at 5.16.3perl --version

ElGato

Perl is installed on the operating system of each node and is currently at 5.16.3.  perl --version
Ocelote

There are two versions of Perl available on Ocelote

  • Perl 5.10.1 is the default if you just want to use the system version. Try  perl --version
  • Perl 5.22.1 is the default module provided with module load perl; instmodsh

    Code Block
    languagebash
    themeMidnight
    [netid@compute_hostname ~]$ perl --version
    
    This is perl 5, version 16, subversion 3 (v5.16.3) built for x86_64-linux-thread-multi
    (with 44 registered patches, see perl -V for more detail)
    ...


    Perl Module Policy

    We will provide a version of perl through modules or the operating system and the user is expected to create their own perl environment using perl-virtualenv.

    Here is For a useful helpful Perl tutorial, see:
     http://www.tutorialspoint.com/perl/perl_modules.htm 
    Additionally, O'Reilly Media is a well regarded source for Perl 

    Installing Perl Packages Using perl-virtualenv

    One of the best things about Perl is the number of packages provided by the user community. Installing packages generally requires root access but that is not a viable solution in the HPC environment.

    There is an An easy solution . You can is to use perl-virtualenv to create a consistent personal Perl environment that will persist for each time you log in.  There is no risk of packages being updated under you for another user.  

    Here is an example session:

    Code Block[netid@login2

      

    Code Block
    languagebash
    themeMidnight
    titleExample of creating and using a Perl virtual environment
    [netid@i0n1 ~]$ module list
    Currently Loaded Modulefiles:
      1) pbspro/13.0.2.153173perl-virtualenv my_project.   2) gcc/5.2.0
    
    [netid@login2 ~]$ module load perl
    
    [netid@login2 ~]$ perl-virtualenv my_project
    perl: /cm/shared/uaapps/perl/5.22.1/ # Create virtual environment
    perl path: /usr/bin/perl
    venv path: /home/u13uxx/netid/my_project
    
    [netid@login2netid@i0n1 ~]$ source my_project/bin/activate Attempting# toActivate create directory /home/u13/chrisreidy/my_project
    
    virtual environment
    (my_project)[netid@login2netid@i0n1 ~]$ cpanm -i Config::Trivial
    --> Working on Config::Trivial
    Fetching http://www.cpan.org/authors/id/A/AT/ATRICKETT/Config-Trivial-0.81.tar.gz ... OK
    Configuring Config-Trivial-0.81 ... OK
    ==> Found dependencies: Pod::Coverage, Test::Pod::Coverage, IO::Capture
    --> Working on Pod::Coverage
    Fetching http://www.cpan.org/authors/id/R/RC/RCLAMP/Pod-Coverage-0.23.tar.gz ... OK
    Configuring Pod-Coverage-0.23 ...
    OK
    Building and testing Pod-Coverage-0.23 ... OK
    Successfully installed Pod-Coverage-0.23
    --> Working on Test::Pod::Coverage
    Fetching http://www.cpan.org/authors/id/N/NE/NEILB/Test-Pod-Coverage-1.10.tar.gz ... OK
    Configuring Test-Pod-Coverage-1.10 ... OK
    Building and testing Test-Pod-Coverage-1.10 ... OK
    Successfully installed Test-Pod-Coverage-1.10
    --> Working on IO::Capture
    Fetching http://www.cpan.org/authors/id/R/RE/REYNOLDS/IO-Capture-0.05.tar.gz ... OK
    Configuring IO-Capture-0.04 ... OK
    Building and testing IO-Capture-0.05 ... OK
    Successfully installed IO-Capture-0.05
    Building and testing Config-Trivial-0.81 ... OK
    Successfully installed Config-Trivial-0.81
    4 distributions installed4 distributions installed
    (my_project)[netid@i0n1 ~]$